// plasmaWordIndex.java // ----------------------- // part of YACY // (C) by Michael Peter Christen; mc@anomic.de // first published on http://www.anomic.de // Frankfurt, Germany, 2005 // // $LastChangedDate$ // $LastChangedRevision$ // $LastChangedBy$ // // This program is free software; you can redistribute it and/or modify // it under the terms of the GNU General Public License as published by // the Free Software Foundation; either version 2 of the License, or // (at your option) any later version. // // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA // // Using this software in any meaning (reading, learning, copying, compiling, // running) means that you agree that the Author(s) is (are) not responsible // for cost, loss of data or any harm that may be caused directly or indirectly // by usage of this softare or this documentation. The usage of this software // is on your own risk. The installation and usage (starting/running) of this // software may allow other people or application to access your computer and // any attached devices and is highly dependent on the configuration of the // software which must be done by the user of the software; the author(s) is // (are) also not responsible for proper configuration and usage of the // software, even if provoked by documentation provided together with // the software. // // Any changes to this file according to the GPL as documented in the file // gpl.txt aside this file in the shipment you received can be done to the // lines that follows this copyright notice here, but changes must not be // done inside the copyright notive above. A re-distribution must contain // the intact and unchanged copyright notice. // Contributions and changes to the program code must be marked as such. // compile with // javac -classpath classes -sourcepath source -d classes -g source/de/anomic/plasma/*.java package de.anomic.plasma; import java.io.File; import java.io.IOException; import java.util.Iterator; import java.util.Map; import java.util.HashSet; import java.util.Set; import java.util.Date; import java.net.URL; import de.anomic.htmlFilter.htmlFilterContentScraper; import de.anomic.kelondro.kelondroBase64Order; import de.anomic.kelondro.kelondroException; import de.anomic.kelondro.kelondroMergeIterator; import de.anomic.kelondro.kelondroNaturalOrder; import de.anomic.server.logging.serverLog; public final class plasmaWordIndex { private static final String indexAssortmentClusterPath = "ACLUSTER"; private static final int assortmentCount = 64; private final File databaseRoot; private final plasmaWordIndexCache ramCache; private final plasmaWordIndexAssortmentCluster assortmentCluster; private int assortmentBufferSize; //kb private final plasmaWordIndexClassicDB backend; public plasmaWordIndex(File databaseRoot, int bufferkb, serverLog log) { this.databaseRoot = databaseRoot; this.backend = new plasmaWordIndexClassicDB(databaseRoot, log); this.ramCache = new plasmaWordIndexCache(databaseRoot, log); // create new assortment cluster path File assortmentClusterPath = new File(databaseRoot, indexAssortmentClusterPath); if (!(assortmentClusterPath.exists())) assortmentClusterPath.mkdirs(); this.assortmentBufferSize = bufferkb; this.assortmentCluster = new plasmaWordIndexAssortmentCluster(assortmentClusterPath, assortmentCount, assortmentBufferSize, log); } public File getRoot() { return databaseRoot; } public int maxURLinWordCache() { return ramCache.maxURLinWordCache(); } public int wordCacheRAMSize() { return ramCache.wordCacheRAMSize(); } public int[] assortmentsSizes() { return assortmentCluster.sizes(); } public int[] assortmentsCacheChunkSizeAvg() { return assortmentCluster.cacheChunkSizeAvg(); } public int[] assortmentsCacheFillStatusCml() { return assortmentCluster.cacheFillStatusCml(); } public void setMaxWords(int maxWordsLow, int maxWordsHigh) { ramCache.setMaxWords(maxWordsLow, maxWordsHigh); } public int addEntries(plasmaWordIndexEntryContainer entries, long updateTime, boolean highPriority) { int added = ramCache.addEntries(entries, updateTime, highPriority); // force flush if (highPriority) { if (ramCache.size() > ramCache.getMaxWordsHigh()) { while (ramCache.size() + 500 > ramCache.getMaxWordsHigh()) { try { Thread.sleep(10); } catch (InterruptedException e) { } flushCacheToBackend(ramCache.bestFlushWordHash()); }} } else { if (ramCache.size() > ramCache.getMaxWordsLow()) { while (ramCache.size() + 500 > ramCache.getMaxWordsLow()) { try { Thread.sleep(10); } catch (InterruptedException e) { } flushCacheToBackend(ramCache.bestFlushWordHash()); }} } return added; } private void flushCacheToBackend(String wordHash) { plasmaWordIndexEntryContainer c = ramCache.deleteContainer(wordHash); plasmaWordIndexEntryContainer feedback = assortmentCluster.storeTry(wordHash, c); if (feedback != null) { backend.addEntries(feedback, System.currentTimeMillis(), true); } } public int addEntriesBackend(plasmaWordIndexEntryContainer entries) { plasmaWordIndexEntryContainer feedback = assortmentCluster.storeTry(entries.wordHash(), entries); if (feedback == null) { return entries.size(); } else { return backend.addEntries(feedback, -1, true); } } private static final int hour = 3600000; private static final int day = 86400000; public static int microDateDays(Date modified) { return microDateDays(modified.getTime()); } public static int microDateDays(long modified) { // this calculates a virtual age from a given date // the purpose is to have an age in days of a given modified date // from a fixed standpoint in the past // one day has 60*60*24 seconds = 86400 seconds // we take mod 64**3 = 262144, this is the mask of the storage return (int) ((modified / day) % 262144); } public static String microDateHoursStr(long time) { return kelondroBase64Order.enhancedCoder.encodeLong(microDateHoursInt(time), 3); } public static int microDateHoursInt(long time) { return (int) ((time / hour) % 262144); } public static int microDateHoursAge(String mdhs) { return microDateHoursInt(System.currentTimeMillis()) - (int) kelondroBase64Order.enhancedCoder.decodeLong(mdhs); } public static long reverseMicroDateDays(int microDateDays) { return ((long) microDateDays) * ((long) day); } public int addPageIndex(URL url, String urlHash, Date urlModified, int size, plasmaCondenser condenser, String language, char doctype) { // this is called by the switchboard to put in a new page into the index // use all the words in one condenser object to simultanous create index entries // iterate over all words Iterator i = condenser.words(); Map.Entry wentry; String word; plasmaWordIndexEntry ientry; plasmaCondenser.wordStatProp wprop; String wordHash; int urlLength = url.toString().length(); int urlComps = htmlFilterContentScraper.urlComps(url.toString()).length; while (i.hasNext()) { wentry = (Map.Entry) i.next(); word = (String) wentry.getKey(); wprop = (plasmaCondenser.wordStatProp) wentry.getValue(); // if ((s.length() > 4) && (c > 1)) System.out.println("# " + s + ":" + c); wordHash = plasmaWordIndexEntry.word2hash(word); ientry = new plasmaWordIndexEntry(urlHash, urlLength, urlComps, wprop.count, condenser.RESULT_SIMI_WORDS, condenser.RESULT_SIMI_SENTENCES, wprop.posInText, wprop.posInPhrase, wprop.numOfPhrase, 0, size, urlModified.getTime(), System.currentTimeMillis(), condenser.RESULT_WORD_ENTROPHY, language, doctype, true); addEntries(plasmaWordIndexEntryContainer.instantContainer(wordHash, System.currentTimeMillis(), ientry), System.currentTimeMillis(), false); } // System.out.println("DEBUG: plasmaSearch.addPageIndex: added " + // condenser.getWords().size() + " words, flushed " + c + " entries"); return condenser.RESULT_SIMI_WORDS; } public plasmaWordIndexEntryContainer getContainer(String wordHash, boolean deleteIfEmpty, long maxTime) { long start = System.currentTimeMillis(); plasmaWordIndexEntryContainer container = new plasmaWordIndexEntryContainer(wordHash); // get from cache // We must not use the container from cache to store everything we find, // as that container remains linked to in the cache and might be changed later // while the returned container is still in use. // e.g. indexTransfer might keep this container for minutes while // several new pages could be added to the index, possibly with the same words that have // been selected for transfer container.add(ramCache.getContainer(wordHash, true)); // get from assortments container.add(assortmentCluster.getFromAll(wordHash, (maxTime < 0) ? -1 : maxTime / 2)); // get from backend if (maxTime > 0) { maxTime = maxTime - (System.currentTimeMillis() - start); if (maxTime < 0) maxTime = 100; } container.add(backend.getContainer(wordHash, deleteIfEmpty, (maxTime < 0) ? -1 : maxTime)); return container; } public plasmaWordIndexEntity getEntity(String wordHash, boolean deleteIfEmpty, long maxTime) { // this possibly creates an index file in the back-end // the index file is opened and returned as entity object long start = System.currentTimeMillis(); flushCacheToBackend(wordHash); if (maxTime < 0) { flushFromAssortmentCluster(wordHash, -1); } else { long remaining = maxTime - (System.currentTimeMillis() - start); if (remaining > 0) flushFromAssortmentCluster(wordHash, remaining); } long r = maxTime - (System.currentTimeMillis() - start); return backend.getEntity(wordHash, deleteIfEmpty, (r < 0) ? 0 : r); } public Set getContainers(Set wordHashes, boolean deleteIfEmpty, boolean interruptIfEmpty, long maxTime) { // retrieve entities that belong to the hashes HashSet containers = new HashSet(); String singleHash; plasmaWordIndexEntryContainer singleContainer; Iterator i = wordHashes.iterator(); long start = System.currentTimeMillis(); long remaining; while (i.hasNext()) { // check time remaining = maxTime - (System.currentTimeMillis() - start); //if ((maxTime > 0) && (remaining <= 0)) break; // get next hash: singleHash = (String) i.next(); // retrieve index singleContainer = getContainer(singleHash, deleteIfEmpty, (maxTime < 0) ? -1 : remaining / (wordHashes.size() - containers.size())); // check result if (((singleContainer == null) || (singleContainer.size() == 0)) && (interruptIfEmpty)) return new HashSet(); containers.add(singleContainer); } return containers; } public int size() { return java.lang.Math.max(assortmentCluster.sizeTotal(), java.lang.Math.max(backend.size(), ramCache.size())); } public int indexSize(String wordHash) { int size = 0; try { plasmaWordIndexEntity entity = backend.getEntity(wordHash, true, -1); if (entity != null) { size += entity.size(); entity.close(); } } catch (IOException e) {} size += assortmentCluster.indexSize(wordHash); size += ramCache.indexSize(wordHash); return size; } public void intermission(long pause) { //this.ramCache.intermission(pause); } public void close(int waitingBoundSeconds) { ramCache.close(waitingBoundSeconds); assortmentCluster.close(); backend.close(10); } public void deleteIndex(String wordHash) { ramCache.deleteContainer(wordHash); assortmentCluster.removeFromAll(wordHash, -1); backend.deleteIndex(wordHash); } public synchronized int removeEntries(String wordHash, String[] urlHashes, boolean deleteComplete) { int removed = 0; removed += ramCache.removeEntries(wordHash, urlHashes, deleteComplete); plasmaWordIndexEntryContainer container = assortmentCluster.removeFromAll(wordHash, -1); if (container != null) { removed += container.removeEntries(wordHash, urlHashes, deleteComplete); if (container.size() != 0) this.addEntries(container, System.currentTimeMillis(), false); } removed += backend.removeEntries(wordHash, urlHashes, deleteComplete); return removed; } private boolean flushFromAssortmentCluster(String key, long maxTime) { // this should only be called if the assortment shall be deleted or returned in an index entity if (maxTime > 0) maxTime = 8 * maxTime / 10; // reserve time for later adding to backend plasmaWordIndexEntryContainer container = assortmentCluster.removeFromAll(key, maxTime); if (container == null) { return false; } else { // we have a non-empty entry-container // integrate it to the backend return backend.addEntries(container, container.updated(), true) > 0; } } public static final int RL_RAMCACHE = 0; public static final int RL_FILECACHE = 1; public static final int RL_ASSORTMENTS = 2; public static final int RL_WORDFILES = 3; public Iterator wordHashes(String startHash, int resourceLevel, boolean rot) { if (rot) return new rotatingWordIterator(startHash, resourceLevel); else return new correctedWordIterator(startHash, resourceLevel, rot); // use correction until bug is found } private Iterator wordHashesX(String startWordHash, int resourceLevel, boolean rot) { if (resourceLevel == plasmaWordIndex.RL_RAMCACHE) { return ramCache.wordHashes(startWordHash, rot); } /* if (resourceLevel == plasmaWordIndex.RL_FILECACHE) { } */ if (resourceLevel == plasmaWordIndex.RL_ASSORTMENTS) { return new kelondroMergeIterator( ramCache.wordHashes(startWordHash, rot), assortmentCluster.hashConjunction(startWordHash, true, rot), kelondroNaturalOrder.naturalOrder, true); } if (resourceLevel == plasmaWordIndex.RL_WORDFILES) { return new kelondroMergeIterator( new kelondroMergeIterator( ramCache.wordHashes(startWordHash, rot), assortmentCluster.hashConjunction(startWordHash, true, rot), kelondroNaturalOrder.naturalOrder, true), backend.wordHashes(startWordHash, true, false), kelondroNaturalOrder.naturalOrder, true); } return null; } private final class correctedWordIterator implements Iterator { Iterator iter; String nextWord; public correctedWordIterator(String firstWord, int resourceLevel, boolean rotating) { iter = wordHashesX(firstWord, resourceLevel, rotating); try { nextWord = (iter.hasNext()) ? (String) iter.next() : null; boolean corrected = true; int cc = 0; // to avoid rotation loops while ((nextWord != null) && (corrected) && (cc < 50)) { int c = firstWord.compareTo(nextWord); corrected = false; if (c > 0) { // firstKey > nextNode.getKey() //System.out.println("CORRECTING WORD ITERATOR: firstWord=" + firstWord + ", nextWord=" + nextWord); nextWord = (iter.hasNext()) ? (String) iter.next() : null; corrected = true; cc++; } } } catch (java.util.ConcurrentModificationException e) { nextWord = null; } } public void finalize() { iter = null; nextWord = null; } public boolean hasNext() { return nextWord != null; } public Object next() { String r = nextWord; try { nextWord = (iter.hasNext()) ? (String) iter.next() : null; } catch (java.util.ConcurrentModificationException e) { nextWord = null; } return r; } public void remove() { throw new java.lang.UnsupportedOperationException("correctedWordIterator does not support remove"); } } // correctedWordIterator private class rotatingWordIterator implements Iterator { Iterator i; int resourceLevel; public rotatingWordIterator(String startWordHash, int resourceLevel) { this.resourceLevel = resourceLevel; i = new correctedWordIterator(startWordHash, resourceLevel, false); } public void finalize() { i = null; } public boolean hasNext() { if (i.hasNext()) return true; else { i = new correctedWordIterator("------------", resourceLevel, false); return i.hasNext(); } } public Object next() { return i.next(); } public void remove() { throw new java.lang.UnsupportedOperationException("rotatingWordIterator does not support remove"); } } // class rotatingWordIterator /* public Iterator fileIterator(String startHash, boolean up, boolean deleteEmpty) { return new iterateFiles(startHash, up, deleteEmpty); } public final class iterateFiles implements Iterator { // Iterator of hash-strings in WORDS path private final ArrayList hierarchy; // contains TreeSet elements, earch TreeSet contains File Entries private final Comparator comp; // for string-compare private String buffer; // the prefetch-buffer private final boolean delete; public iterateFiles(String startHash, boolean up, boolean deleteEmpty) { this.hierarchy = new ArrayList(); this.comp = kelondroNaturalOrder.naturalOrder; // this is the wrong ordering but mut be used as long as the assortments uses the same ordering //this.comp = new kelondroBase64Order(up, false); this.delete = deleteEmpty; // the we initially fill the hierarchy with the content of the root folder String path = "WORDS"; TreeSet list = list(new File(databaseRoot, path)); // if we have a start hash then we find the appropriate subdirectory to start if ((startHash != null) && (startHash.length() == yacySeedDB.commonHashLength)) { delete(startHash.substring(0, 1), list); if (list.size() > 0) { hierarchy.add(list); String[] paths = new String[]{startHash.substring(0, 1), startHash.substring(1, 2), startHash.substring(2, 4), startHash.substring(4, 6)}; int pathc = 0; while ((pathc < paths.length) && (comp.compare((String) list.first(), paths[pathc]) == 0)) { path = path + "/" + paths[pathc]; list = list(new File(databaseRoot, path)); delete(paths[pathc], list); if (list.size() == 0) break; hierarchy.add(list); pathc++; } } while (((buffer = next0()) != null) && (comp.compare(buffer, startHash) < 0)) {}; } else { hierarchy.add(list); buffer = next0(); } } private synchronized void delete(String pattern, TreeSet names) { String name; while ((names.size() > 0) && (comp.compare((new File(name = (String) names.first())).getName(), pattern) < 0)) names.remove(name); } private TreeSet list(File path) { // System.out.println("PATH: " + path); TreeSet t = new TreeSet(comp); String[] l = path.list(); if (l != null) for (int i = 0; i < l.length; i++) t.add(path + "/" + l[i]); // else System.out.println("DEBUG: wrong path " + path); // System.out.println(t); return t; } private synchronized String next0() { // the object is a File pointing to the corresponding file File f; String n; TreeSet t; do { t = null; while ((t == null) && (hierarchy.size() > 0)) { t = (TreeSet) hierarchy.get(hierarchy.size() - 1); if (t.size() == 0) { hierarchy.remove(hierarchy.size() - 1); // we step up one hierarchy t = null; } } if ((hierarchy.size() == 0) || (t.size() == 0)) return null; // this is the end // fetch value f = new File(n = (String) t.first()); t.remove(n); // if the value represents another folder, we step into the next hierarchy if (f.isDirectory()) { t = list(f); if (t.size() == 0) { if (delete) f.delete(); } else { hierarchy.add(t); } f = null; } } while (f == null); // thats it if ((f == null) || ((n = f.getName()) == null) || (n.length() < yacySeedDB.commonHashLength)) { return null; } else { return n.substring(0, yacySeedDB.commonHashLength); } } public boolean hasNext() { return buffer != null; } public Object next() { String r = buffer; while (((buffer = next0()) != null) && (comp.compare(buffer, r) < 0)) {}; return r; } public void remove() { } } */ public Object migrateWords2Assortment(String wordhash) throws IOException { // returns the number of entries that had been added to the assortments // can be negative if some assortments have been moved to the backend File db = plasmaWordIndexEntity.wordHash2path(databaseRoot, wordhash); if (!(db.exists())) return "not available"; plasmaWordIndexEntity entity = null; try { entity = new plasmaWordIndexEntity(databaseRoot, wordhash, true); int size = entity.size(); if (size > assortmentCluster.clusterCapacity) { // this will be too big to integrate it entity.close(); entity = null; return "too big"; } else { // take out all words from the assortment to see if it fits // together with the extracted assortment plasmaWordIndexEntryContainer container = assortmentCluster.removeFromAll(wordhash, -1); if (size + container.size() > assortmentCluster.clusterCapacity) { // this will also be too big to integrate, add to entity entity.addEntries(container); entity.close(); entity = null; return new Integer(-container.size()); } else { // the combined container will fit, read the container try { Iterator entries = entity.elements(true); plasmaWordIndexEntry entry; while (entries.hasNext()) { entry = (plasmaWordIndexEntry) entries.next(); // System.out.println("ENTRY = " + entry.getUrlHash()); container.add(new plasmaWordIndexEntry[]{entry}, System.currentTimeMillis()); } // we have read all elements, now delete the entity entity.deleteComplete(); entity.close(); entity = null; // integrate the container into the assortments; this will work assortmentCluster.storeTry(wordhash, container); return new Integer(size); } catch (kelondroException e) { // database corrupted, we simply give up the database and delete it try {entity.close();} catch (Exception ee) {} entity = null; try {db.delete();} catch (Exception ee) {} return "database corrupted; deleted"; } } } } finally { if (entity != null) try {entity.close();}catch(Exception e){} } } public static void main(String[] args) { // System.out.println(kelondroMSetTools.fastStringComparator(true).compare("RwGeoUdyDQ0Y", "rwGeoUdyDQ0Y")); // System.out.println(new Date(reverseMicroDateDays(microDateDays(System.currentTimeMillis())))); plasmaWordIndex index = new plasmaWordIndex(new File("D:\\dev\\proxy\\DATA\\PLASMADB"), 555, new serverLog("TESTAPP")); Iterator iter = index.wordHashes("5A8yhZMh_Kmv", plasmaWordIndex.RL_WORDFILES, true); while (iter.hasNext()) { System.out.println("File: " + (String) iter.next()); } } }