// plasmaWordIndex.java // ----------------------- // part of YACY // (C) by Michael Peter Christen; mc@anomic.de // first published on http://www.anomic.de // Frankfurt, Germany, 2005 // // $LastChangedDate$ // $LastChangedRevision$ // $LastChangedBy$ // // This program is free software; you can redistribute it and/or modify // it under the terms of the GNU General Public License as published by // the Free Software Foundation; either version 2 of the License, or // (at your option) any later version. // // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA // // Using this software in any meaning (reading, learning, copying, compiling, // running) means that you agree that the Author(s) is (are) not responsible // for cost, loss of data or any harm that may be caused directly or indirectly // by usage of this softare or this documentation. The usage of this software // is on your own risk. The installation and usage (starting/running) of this // software may allow other people or application to access your computer and // any attached devices and is highly dependent on the configuration of the // software which must be done by the user of the software; the author(s) is // (are) also not responsible for proper configuration and usage of the // software, even if provoked by documentation provided together with // the software. // // Any changes to this file according to the GPL as documented in the file // gpl.txt aside this file in the shipment you received can be done to the // lines that follows this copyright notice here, but changes must not be // done inside the copyright notive above. A re-distribution must contain // the intact and unchanged copyright notice. // Contributions and changes to the program code must be marked as such. // compile with // javac -classpath classes -sourcepath source -d classes -g source/de/anomic/plasma/*.java package de.anomic.plasma; import java.io.File; import java.io.IOException; import java.util.Iterator; import java.util.Map; import java.util.HashSet; import java.util.Set; import java.util.Date; import java.util.TreeSet; import java.net.URL; import de.anomic.htmlFilter.htmlFilterContentScraper; import de.anomic.kelondro.kelondroBase64Order; import de.anomic.kelondro.kelondroException; import de.anomic.kelondro.kelondroMergeIterator; import de.anomic.kelondro.kelondroNaturalOrder; import de.anomic.kelondro.kelondroOrder; import de.anomic.server.logging.serverLog; public final class plasmaWordIndex { private static final String indexAssortmentClusterPath = "ACLUSTER"; private static final int assortmentCount = 64; private final File databaseRoot; private final plasmaWordIndexCache ramCache; private final plasmaWordIndexAssortmentCluster assortmentCluster; private int assortmentBufferSize; //kb private final plasmaWordIndexClassicDB backend; private final kelondroOrder indexOrder = new kelondroNaturalOrder(true); public plasmaWordIndex(File databaseRoot, int bufferkb, serverLog log) { this.databaseRoot = databaseRoot; this.backend = new plasmaWordIndexClassicDB(databaseRoot, log); this.ramCache = new plasmaWordIndexCache(databaseRoot, log); // create new assortment cluster path File assortmentClusterPath = new File(databaseRoot, indexAssortmentClusterPath); if (!(assortmentClusterPath.exists())) assortmentClusterPath.mkdirs(); this.assortmentBufferSize = bufferkb; this.assortmentCluster = new plasmaWordIndexAssortmentCluster(assortmentClusterPath, assortmentCount, assortmentBufferSize, log); } public File getRoot() { return databaseRoot; } public int maxURLinWCache() { return ramCache.maxURLinWCache(); } public long minAgeOfWCache() { return ramCache.minAgeOfWCache(); } public long maxAgeOfWCache() { return ramCache.maxAgeOfWCache(); } public long minAgeOfKCache() { return ramCache.minAgeOfKCache(); } public long maxAgeOfKCache() { return ramCache.maxAgeOfKCache(); } public int wSize() { return ramCache.wSize(); } public int kSize() { return ramCache.kSize(); } public int[] assortmentsSizes() { return assortmentCluster.sizes(); } public int[] assortmentsCacheChunkSizeAvg() { return assortmentCluster.cacheChunkSizeAvg(); } public int[] assortmentsCacheFillStatusCml() { return assortmentCluster.cacheFillStatusCml(); } public void setMaxWordCount(int maxWords) { ramCache.setMaxWordCount(maxWords); } public void flushControl() { // check for forced flush synchronized (this) { ramCache.shiftK2W(); } while (ramCache.maxURLinWCache() > plasmaWordIndexCache.wCacheReferenceLimit) { flushCache(1); } if (ramCache.wSize() > ramCache.getMaxWordCount()) { while (ramCache.wSize() + 500 > ramCache.getMaxWordCount()) { flushCache(1); } } } public boolean addEntry(String wordHash, plasmaWordIndexEntry entry, long updateTime, boolean dhtCase) { if (ramCache.addEntry(wordHash, entry, updateTime, dhtCase)) { if (!dhtCase) flushControl(); return true; } return false; } public int addEntries(plasmaWordIndexEntryContainer entries, long updateTime, boolean dhtCase) { int added = ramCache.addEntries(entries, updateTime, dhtCase); // force flush if (!dhtCase) flushControl(); return added; } public void flushCacheSome() { synchronized (this) { ramCache.shiftK2W(); } int flushCount = ramCache.wSize() / 500; if (flushCount > 70) flushCount = 70; if (flushCount < 5) flushCount = 5; flushCache(flushCount); } public void flushCache(int count) { for (int i = 0; i < count; i++) { if (ramCache.wSize() == 0) break; synchronized (this) { flushCache(ramCache.bestFlushWordHash()); } try {Thread.sleep(10);} catch (InterruptedException e) {} } } private synchronized void flushCache(String wordHash) { plasmaWordIndexEntryContainer c = ramCache.deleteContainer(wordHash); if (c != null) { plasmaWordIndexEntryContainer feedback = assortmentCluster.storeTry(wordHash, c); if (feedback != null) { backend.addEntries(feedback, System.currentTimeMillis(), true); } } } private static final int hour = 3600000; private static final int day = 86400000; public static int microDateDays(Date modified) { return microDateDays(modified.getTime()); } public static int microDateDays(long modified) { // this calculates a virtual age from a given date // the purpose is to have an age in days of a given modified date // from a fixed standpoint in the past // one day has 60*60*24 seconds = 86400 seconds // we take mod 64**3 = 262144, this is the mask of the storage return (int) ((modified / day) % 262144); } public static String microDateHoursStr(long time) { return kelondroBase64Order.enhancedCoder.encodeLong(microDateHoursInt(time), 3); } public static int microDateHoursInt(long time) { return (int) ((time / hour) % 262144); } public static int microDateHoursAge(String mdhs) { return microDateHoursInt(System.currentTimeMillis()) - (int) kelondroBase64Order.enhancedCoder.decodeLong(mdhs); } public static long reverseMicroDateDays(int microDateDays) { return ((long) microDateDays) * ((long) day); } public int addPageIndex(URL url, String urlHash, Date urlModified, int size, plasmaParserDocument document, plasmaCondenser condenser, String language, char doctype, int outlinksSame, int outlinksOther) { // this is called by the switchboard to put in a new page into the index // use all the words in one condenser object to simultanous create index entries // iterate over all words Iterator i = condenser.words(); Map.Entry wentry; String word; plasmaWordIndexEntry ientry; plasmaCondenser.wordStatProp wprop; String wordHash; int urlLength = url.toString().length(); int urlComps = htmlFilterContentScraper.urlComps(url.toString()).length; while (i.hasNext()) { wentry = (Map.Entry) i.next(); word = (String) wentry.getKey(); wprop = (plasmaCondenser.wordStatProp) wentry.getValue(); // if ((s.length() > 4) && (c > 1)) System.out.println("# " + s + ":" + c); wordHash = plasmaWordIndexEntry.word2hash(word); ientry = new plasmaWordIndexEntry(urlHash, urlLength, urlComps, (document == null) ? urlLength : document.longTitle.length(), wprop.count, condenser.RESULT_SIMI_WORDS, condenser.RESULT_SIMI_SENTENCES, wprop.posInText, wprop.posInPhrase, wprop.numOfPhrase, 0, size, urlModified.getTime(), System.currentTimeMillis(), condenser.RESULT_WORD_ENTROPHY, language, doctype, outlinksSame, outlinksOther, true); addEntry(wordHash, ientry, System.currentTimeMillis(), false); } // System.out.println("DEBUG: plasmaSearch.addPageIndex: added " + // condenser.getWords().size() + " words, flushed " + c + " entries"); return condenser.RESULT_SIMI_WORDS; } public plasmaWordIndexEntryContainer getContainer(String wordHash, boolean deleteIfEmpty, long maxTime) { long start = System.currentTimeMillis(); plasmaWordIndexEntryContainer container = new plasmaWordIndexEntryContainer(wordHash); // get from cache // We must not use the container from cache to store everything we find, // as that container remains linked to in the cache and might be changed later // while the returned container is still in use. // e.g. indexTransfer might keep this container for minutes while // several new pages could be added to the index, possibly with the same words that have // been selected for transfer container.add(ramCache.getContainer(wordHash, true), (maxTime < 0) ? -1 : maxTime / 2); // get from assortments container.add(assortmentCluster.getFromAll(wordHash, (maxTime < 0) ? -1 : maxTime / 2), (maxTime < 0) ? -1 : maxTime / 2); // get from backend if (maxTime > 0) { maxTime = maxTime - (System.currentTimeMillis() - start); if (maxTime < 0) maxTime = 100; } container.add(backend.getContainer(wordHash, deleteIfEmpty, (maxTime < 0) ? -1 : maxTime / 2), (maxTime < 0) ? -1 : maxTime / 2); return container; } public Set getContainers(Set wordHashes, boolean deleteIfEmpty, boolean interruptIfEmpty, long maxTime) { // retrieve entities that belong to the hashes HashSet containers = new HashSet(); String singleHash; plasmaWordIndexEntryContainer singleContainer; Iterator i = wordHashes.iterator(); long start = System.currentTimeMillis(); long remaining; while (i.hasNext()) { // check time remaining = maxTime - (System.currentTimeMillis() - start); //if ((maxTime > 0) && (remaining <= 0)) break; if ((maxTime >= 0) && (remaining <= 0)) remaining = 100; // get next hash: singleHash = (String) i.next(); // retrieve index singleContainer = getContainer(singleHash, deleteIfEmpty, (maxTime < 0) ? -1 : remaining / (wordHashes.size() - containers.size())); // check result if (((singleContainer == null) || (singleContainer.size() == 0)) && (interruptIfEmpty)) return new HashSet(); containers.add(singleContainer); } return containers; } public int size() { return java.lang.Math.max(assortmentCluster.sizeTotal(), java.lang.Math.max(backend.size(), ramCache.size())); } public int indexSize(String wordHash) { int size = 0; try { plasmaWordIndexEntity entity = backend.getEntity(wordHash, true, -1); if (entity != null) { size += entity.size(); entity.close(); } } catch (IOException e) {} size += assortmentCluster.indexSize(wordHash); size += ramCache.indexSize(wordHash); return size; } public synchronized void close(int waitingBoundSeconds) { ramCache.close(waitingBoundSeconds); assortmentCluster.close(); backend.close(10); } public synchronized void deleteIndex(String wordHash) { ramCache.deleteContainer(wordHash); assortmentCluster.removeFromAll(wordHash, -1); backend.deleteIndex(wordHash); } public int removeEntries(String wordHash, String[] urlHashes, boolean deleteComplete) { int removed; boolean addedEntryToRamCache = false; synchronized (this) { removed = ramCache.removeEntries(wordHash, urlHashes, deleteComplete); if (removed == urlHashes.length) return removed; plasmaWordIndexEntryContainer container = assortmentCluster.removeFromAll(wordHash, -1); if (container != null) { removed += container.removeEntries(wordHash, urlHashes, deleteComplete); if (container.size() != 0) { ramCache.addEntries(container, System.currentTimeMillis(), false); addedEntryToRamCache = true; } } if (removed != urlHashes.length) { removed += backend.removeEntries(wordHash, urlHashes, deleteComplete); } } if (addedEntryToRamCache) flushControl(); return removed; } public int tryRemoveURLs(String urlHash) { // this tries to delete an index from the cache that has this // urlHash assigned. This can only work if the entry is really fresh // and can be found in the RAM cache // this returns the number of deletion that had been possible return ramCache.tryRemoveURLs(urlHash); } public static final int RL_RAMCACHE = 0; public static final int RL_FILECACHE = 1; public static final int RL_ASSORTMENTS = 2; public static final int RL_WORDFILES = 3; public synchronized TreeSet wordHashSet(String startHash, int resourceLevel, boolean rot, int count) throws IOException { kelondroOrder hashOrder = (kelondroOrder) indexOrder.clone(); hashOrder.rotate(startHash.getBytes()); TreeSet hashes = new TreeSet(hashOrder); Iterator i = wordHashes(startHash, resourceLevel, rot); if (resourceLevel == plasmaWordIndex.RL_RAMCACHE) count = Math.min(ramCache.wSize(), count); String hash; while ((count > 0) && (i.hasNext())) { hash = (String) i.next(); if ((hash != null) && (hash.length() > 0)) { hashes.add(hash); count--; } } return hashes; } public Iterator wordHashes(String startHash, int resourceLevel, boolean rot) throws IOException { if (rot) return new rotatingWordIterator(startHash, resourceLevel); else return wordHashes(startHash, resourceLevel); } private Iterator wordHashes(String startWordHash, int resourceLevel) throws IOException { if (resourceLevel == plasmaWordIndex.RL_RAMCACHE) { return ramCache.wordHashes(startWordHash, false); } /* if (resourceLevel == plasmaWordIndex.RL_FILECACHE) { } */ if (resourceLevel == plasmaWordIndex.RL_ASSORTMENTS) { return new kelondroMergeIterator( ramCache.wordHashes(startWordHash, false), assortmentCluster.hashConjunction(startWordHash, true, false), kelondroNaturalOrder.naturalOrder, true); } if (resourceLevel == plasmaWordIndex.RL_WORDFILES) { return new kelondroMergeIterator( new kelondroMergeIterator( ramCache.wordHashes(startWordHash, false), assortmentCluster.hashConjunction(startWordHash, true, false), kelondroNaturalOrder.naturalOrder, true), backend.wordHashes(startWordHash, true, false), kelondroNaturalOrder.naturalOrder, true); } return null; } private class rotatingWordIterator implements Iterator { Iterator i; int resourceLevel; public rotatingWordIterator(String startWordHash, int resourceLevel) throws IOException { this.resourceLevel = resourceLevel; i = wordHashes(startWordHash, resourceLevel); } public void finalize() { i = null; } public boolean hasNext() { if (i.hasNext()) return true; else try { i = wordHashes("------------", resourceLevel); return i.hasNext(); } catch (IOException e) { return false; } } public Object next() { return i.next(); } public void remove() { throw new java.lang.UnsupportedOperationException("rotatingWordIterator does not support remove"); } } // class rotatingWordIterator public Object migrateWords2Assortment(String wordhash) throws IOException { // returns the number of entries that had been added to the assortments // can be negative if some assortments have been moved to the backend File db = plasmaWordIndexEntity.wordHash2path(databaseRoot, wordhash); if (!(db.exists())) return "not available"; plasmaWordIndexEntity entity = null; try { entity = new plasmaWordIndexEntity(databaseRoot, wordhash, true); int size = entity.size(); if (size > assortmentCluster.clusterCapacity) { // this will be too big to integrate it entity.close(); entity = null; return "too big"; } else { // take out all words from the assortment to see if it fits // together with the extracted assortment plasmaWordIndexEntryContainer container = assortmentCluster.removeFromAll(wordhash, -1); if (size + container.size() > assortmentCluster.clusterCapacity) { // this will also be too big to integrate, add to entity entity.addEntries(container); entity.close(); entity = null; return new Integer(-container.size()); } else { // the combined container will fit, read the container try { Iterator entries = entity.elements(true); plasmaWordIndexEntry entry; while (entries.hasNext()) { entry = (plasmaWordIndexEntry) entries.next(); // System.out.println("ENTRY = " + entry.getUrlHash()); container.add(new plasmaWordIndexEntry[]{entry}, System.currentTimeMillis()); } // we have read all elements, now delete the entity entity.deleteComplete(); entity.close(); entity = null; // integrate the container into the assortments; this will work assortmentCluster.storeTry(wordhash, container); return new Integer(size); } catch (kelondroException e) { // database corrupted, we simply give up the database and delete it try {entity.close();} catch (Exception ee) {} entity = null; try {db.delete();} catch (Exception ee) {} return "database corrupted; deleted"; } } } } finally { if (entity != null) try {entity.close();}catch(Exception e){} } } // The Cleaner class was provided as "UrldbCleaner" by Hydrox // see http://www.yacy-forum.de/viewtopic.php?p=18093#18093 public Cleaner makeCleaner(plasmaCrawlLURL lurl, String startHash) { return new Cleaner(lurl, startHash); } public class Cleaner extends Thread { private String startHash; private boolean run = true; private boolean pause = false; public int rwiCountAtStart = 0; public String wordHashNow = ""; public String lastWordHash = ""; public int lastDeletionCounter = 0; private plasmaCrawlLURL lurl; public Cleaner(plasmaCrawlLURL lurl, String startHash) { this.lurl = lurl; this.startHash = startHash; this.rwiCountAtStart = size(); } public void run() { serverLog.logInfo("INDEXCLEANER", "IndexCleaner-Thread started"); String wordHash = ""; plasmaWordIndexEntryContainer wordContainer = null; plasmaWordIndexEntry entry = null; URL url = null; HashSet urlHashs = new HashSet(); try { Iterator wordHashIterator = wordHashSet(startHash, plasmaWordIndex.RL_WORDFILES, false, 100).iterator(); while (wordHashIterator.hasNext() && run) { waiter(); wordHash = (String) wordHashIterator.next(); wordContainer = getContainer(wordHash, true, -1); Iterator containerIterator = wordContainer.entries(); wordHashNow = wordHash; while (containerIterator.hasNext() && run) { waiter(); entry = (plasmaWordIndexEntry) containerIterator.next(); // System.out.println("Wordhash: "+wordHash+" UrlHash: // "+entry.getUrlHash()); try { url = lurl.getEntry(entry.getUrlHash(), null).url(); if ((url == null) || (plasmaSwitchboard.urlBlacklist.isListed(url) == true)) { urlHashs.add(entry.getUrlHash()); } } catch (IOException e) { urlHashs.add(entry.getUrlHash()); } } if (urlHashs.size() > 0) { String[] urlArray; urlArray = (String[]) urlHashs.toArray(new String[0]); int removed = removeEntries(wordHash, urlArray, true); serverLog.logFine("INDEXCLEANER", wordHash + ": " + removed + " of " + wordContainer.size() + " URL-entries deleted"); lastWordHash = wordHash; lastDeletionCounter = urlHashs.size(); urlHashs.clear(); } if (!wordHashIterator.hasNext()) { // We may not be finished yet, try to get the next chunk of wordHashes TreeSet wordHashes = wordHashSet(wordHash, plasmaWordIndex.RL_WORDFILES, false, 100); wordHashIterator = wordHashes.iterator(); // Make sure we don't get the same wordhash twice, but don't skip a word if ((wordHashIterator.hasNext())&&(!wordHash.equals(wordHashIterator.next()))) { wordHashIterator = wordHashes.iterator(); } } } } catch (IOException e) { serverLog.logSevere("INDEXCLEANER", "IndexCleaner-Thread: unable to start: " + e.getMessage()); } serverLog.logInfo("INDEXCLEANER", "IndexCleaner-Thread stopped"); } public void abort() { synchronized(this) { run = false; this.notifyAll(); } } public void pause() { synchronized(this) { if(pause == false) { pause = true; serverLog.logInfo("INDEXCLEANER", "IndexCleaner-Thread paused"); } } } public void endPause() { synchronized(this) { if (pause == true) { pause = false; this.notifyAll(); serverLog.logInfo("INDEXCLEANER", "IndexCleaner-Thread resumed"); } } } public void waiter() { synchronized(this) { if (this.pause) { try { this.wait(); } catch (InterruptedException e) { this.run = false; return; } } } } } public static void main(String[] args) { // System.out.println(kelondroMSetTools.fastStringComparator(true).compare("RwGeoUdyDQ0Y", "rwGeoUdyDQ0Y")); // System.out.println(new Date(reverseMicroDateDays(microDateDays(System.currentTimeMillis())))); plasmaWordIndex index = new plasmaWordIndex(new File("D:\\dev\\proxy\\DATA\\PLASMADB"), 555, new serverLog("TESTAPP")); try { Iterator iter = index.wordHashes("5A8yhZMh_Kmv", plasmaWordIndex.RL_WORDFILES, true); while (iter.hasNext()) { System.out.println("File: " + (String) iter.next()); } } catch (IOException e) { e.printStackTrace(); } } }