// kelondroBytesIntMap.java // (C) 2006 by Michael Peter Christen; mc@yacy.net, Frankfurt a. M., Germany // first published 18.06.2006 on http://www.anomic.de // // $LastChangedDate: 2006-04-02 22:40:07 +0200 (So, 02 Apr 2006) $ // $LastChangedRevision: 1986 $ // $LastChangedBy: orbiter $ // // LICENSE // // This program is free software; you can redistribute it and/or modify // it under the terms of the GNU General Public License as published by // the Free Software Foundation; either version 2 of the License, or // (at your option) any later version. // // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA package de.anomic.kelondro.index; import java.io.BufferedInputStream; import java.io.BufferedOutputStream; import java.io.File; import java.io.FileInputStream; import java.io.FileOutputStream; import java.io.IOException; import java.io.InputStream; import java.io.OutputStream; import java.util.ArrayList; import java.util.Iterator; import java.util.Random; import java.util.TreeMap; import java.util.concurrent.ArrayBlockingQueue; import java.util.concurrent.BlockingQueue; import java.util.concurrent.Callable; import java.util.concurrent.ExecutionException; import java.util.concurrent.ExecutorService; import java.util.concurrent.Executors; import java.util.concurrent.Future; import de.anomic.kelondro.order.Base64Order; import de.anomic.kelondro.order.ByteOrder; import de.anomic.kelondro.order.CloneableIterator; import de.anomic.kelondro.util.MemoryControl; import de.anomic.yacy.dht.FlatWordPartitionScheme; public class IntegerHandleIndex { private final Row rowdef; private ObjectIndexCache index; public IntegerHandleIndex(final int keylength, final ByteOrder objectOrder, final int initialspace, final int expectedspace) { this.rowdef = new Row(new Column[]{new Column("key", Column.celltype_binary, Column.encoder_bytes, keylength, "key"), new Column("int c-4 {b256}")}, objectOrder); this.index = new ObjectIndexCache(rowdef, initialspace, expectedspace); } /** * initialize a BytesLongMap with the content of a dumped index * @param keylength * @param objectOrder * @param file * @throws IOException */ public IntegerHandleIndex(final int keylength, final ByteOrder objectOrder, final File file, final int expectedspace) throws IOException { this(keylength, objectOrder, (int) (file.length() / (keylength + 8)), expectedspace); // read the index dump and fill the index InputStream is = new BufferedInputStream(new FileInputStream(file), 1024 * 1024); byte[] a = new byte[keylength + 4]; int c; Row.Entry entry; while (true) { c = is.read(a); if (c <= 0) break; entry = this.rowdef.newEntry(a); // may be null if a is not well-formed if (entry != null) this.index.addUnique(entry); } is.close(); assert this.index.size() == file.length() / (keylength + 4); } /** * write a dump of the index to a file. All entries are written in order * which makes it possible to read them again in a fast way * @param file * @return the number of written entries * @throws IOException */ public int dump(File file) throws IOException { // we must use an iterator from the combined index, because we need the entries sorted // otherwise we could just write the byte[] from the in kelondroRowSet which would make // everything much faster, but this is not an option here. Iterator i = this.index.rows(true, null); OutputStream os = new BufferedOutputStream(new FileOutputStream(file), 1024 * 1024); int c = 0; while (i.hasNext()) { os.write(i.next().bytes()); c++; } os.flush(); os.close(); return c; } public Row row() { return index.row(); } public void clear() { this.index.clear(); } public synchronized boolean has(final byte[] key) { assert (key != null); return index.has(key); } public synchronized int get(final byte[] key) { assert (key != null); final Row.Entry indexentry = index.get(key); if (indexentry == null) return -1; return (int) indexentry.getColLong(1); } public synchronized int put(final byte[] key, final int i) { assert i >= 0 : "i = " + i; assert (key != null); final Row.Entry newentry = index.row().newEntry(); newentry.setCol(0, key); newentry.setCol(1, i); final Row.Entry oldentry = index.replace(newentry); if (oldentry == null) return -1; return (int) oldentry.getColLong(1); } public synchronized int inc(final byte[] key, int a) { assert key != null; assert a > 0; // it does not make sense to add 0. If this occurres, it is a performance issue final Row.Entry newentry = this.rowdef.newEntry(); newentry.setCol(0, key); newentry.setCol(1, a); long l = index.inc(key, 1, a, newentry); return (int) l; } /* public synchronized int inc(final byte[] key, int a) throws IOException { assert key != null; assert a > 0; // it does not make sense to add 0. If this occurres, it is a performance issue final Row.Entry indexentry = index.get(key); if (indexentry == null) { final Row.Entry newentry = this.rowdef.newEntry(); newentry.setCol(0, key); newentry.setCol(1, a); index.addUnique(newentry); return 1; } else { long l = indexentry.incCol(1, a); index.put(indexentry); return (int) l; } } */ public synchronized void putUnique(final byte[] key, final int i) { assert i >= 0 : "i = " + i; assert (key != null); final Row.Entry newentry = this.rowdef.newEntry(); newentry.setCol(0, key); newentry.setCol(1, i); index.addUnique(newentry); } public synchronized ArrayList removeDoubles() { final ArrayList report = new ArrayList(); Integer[] is; int c, i; final int initialSize = this.size(); for (final RowCollection delset: index.removeDoubles()) { is = new Integer[delset.size()]; c = 0; for (Row.Entry e : delset) { i = (int) e.getColLong(1); assert i < initialSize : "i = " + i + ", initialSize = " + initialSize; is[c++] = Integer.valueOf(i); } report.add(is); } return report; } public synchronized int remove(final byte[] key) { assert (key != null); final Row.Entry indexentry = index.remove(key); if (indexentry == null) return -1; return (int) indexentry.getColLong(1); } public synchronized int removeone() { final Row.Entry indexentry = index.removeOne(); if (indexentry == null) return -1; return (int) indexentry.getColLong(1); } public synchronized int size() { return index.size(); } public synchronized CloneableIterator keys(final boolean up, final byte[] firstKey) { return index.keys(up, firstKey); } public synchronized CloneableIterator rows(final boolean up, final byte[] firstKey) { return index.rows(up, firstKey); } public synchronized void close() { index.close(); index = null; } private static class entry { public byte[] key; public int l; public entry(final byte[] key, final int l) { this.key = key; this.l = l; } } private static final entry poisonEntry = new entry(new byte[0], 0); /** * this method creates a concurrent thread that can take entries that are used to initialize the map * it should be used when a bytesLongMap is initialized when a file is read. Concurrency of FileIO and * map creation will speed up the initialization process. * @param keylength * @param objectOrder * @param space * @param bufferSize * @return */ public static initDataConsumer asynchronusInitializer(final int keylength, final ByteOrder objectOrder, final int space, final int expectedspace, int bufferSize) { initDataConsumer initializer = new initDataConsumer(new IntegerHandleIndex(keylength, objectOrder, space, expectedspace), bufferSize); ExecutorService service = Executors.newSingleThreadExecutor(); initializer.setResult(service.submit(initializer)); service.shutdown(); return initializer; } public static class initDataConsumer implements Callable { private BlockingQueue cache; private IntegerHandleIndex map; private Future result; private boolean sortAtEnd; public initDataConsumer(IntegerHandleIndex map, int bufferCount) { this.map = map; cache = new ArrayBlockingQueue(bufferCount); sortAtEnd = false; } protected void setResult(Future result) { this.result = result; } /** * hand over another entry that shall be inserted into the BytesLongMap with an addl method * @param key * @param l */ public void consume(final byte[] key, final int l) { try { cache.put(new entry(key, l)); } catch (InterruptedException e) { e.printStackTrace(); } } /** * to signal the initialization thread that no more entries will be sublitted with consumer() * this method must be called. The process will not terminate if this is not called before. */ public void finish(boolean sortAtEnd) { this.sortAtEnd = sortAtEnd; try { cache.put(poisonEntry); } catch (InterruptedException e) { e.printStackTrace(); } } /** * this must be called after a finish() was called. this method blocks until all entries * had been processed, and the content was sorted. It returns the kelondroBytesLongMap * that the user wanted to initialize * @return * @throws InterruptedException * @throws ExecutionException */ public IntegerHandleIndex result() throws InterruptedException, ExecutionException { return this.result.get(); } public IntegerHandleIndex call() throws IOException { try { entry c; while ((c = cache.take()) != poisonEntry) { map.putUnique(c.key, c.l); } } catch (InterruptedException e) { e.printStackTrace(); } if (sortAtEnd && map.index instanceof ObjectIndexCache) { ((ObjectIndexCache) map.index).finishInitialization(); } return map; } } public static void main(String[] args) { int count = (args.length == 0) ? 1000000 : Integer.parseInt(args[0]); System.out.println("Starting test with " + count + " objects, minimum memory: " + (count * 16) + " bytes; " + MemoryControl.available() + " available"); Random r = new Random(0); long start = System.currentTimeMillis(); System.gc(); // for resource measurement long a = MemoryControl.available(); IntegerHandleIndex idx = new IntegerHandleIndex(12, Base64Order.enhancedCoder, 0, 150000); for (int i = 0; i < count; i++) { idx.inc(FlatWordPartitionScheme.positionToHash(r.nextInt(count)), 1); } long timek = ((long) count) * 1000L / (System.currentTimeMillis() - start); System.out.println("Result IntegerHandleIndex: " + timek + " inc per second " + count + " loops."); System.gc(); long memk = a - MemoryControl.available(); System.out.println("Used Memory: " + memk + " bytes"); System.out.println("x " + idx.get(FlatWordPartitionScheme.positionToHash(0))); idx = null; r = new Random(0); start = System.currentTimeMillis(); byte[] hash; Integer d; System.gc(); // for resource measurement a = MemoryControl.available(); TreeMap hm = new TreeMap(Base64Order.enhancedCoder); for (int i = 0; i < count; i++) { hash = FlatWordPartitionScheme.positionToHash(r.nextInt(count)); d = hm.get(hash); if (d == null) hm.put(hash, 1); else hm.put(hash, d + 1); } long timej = ((long) count) * 1000L / (System.currentTimeMillis() - start); System.out.println("Result HashMap: " +timej + " inc per second; " + count + " loops."); System.gc(); long memj = a - MemoryControl.available(); System.out.println("Used Memory: " + memj + " bytes"); System.out.println("x " + hm.get(FlatWordPartitionScheme.positionToHash(0))); System.out.println("Geschwindigkeitsfaktor j/k: " + (timej / timek)); System.out.println("Speicherplatzfaktor j/k: " + (memj / memk)); System.exit(0); } }